Hu, X.M.*, Ma, H.Q., Tian, Y.Q., Hu, Y.H., Chen, S.X., Castellanos F.X., Peng, K.P., Yan, C.G.* (2025). The neural basis of dialectical thinking: recent advances and future prospects. Reviews in the Neurosciences, In Press.
Yan, C.-G.*, Wang, X.-D., Lu, B., Deng, Z.-Y., Gao, Q.-L. (2024). DPABINet: A toolbox for brain network and graph theoretical analyses. Science Bulletin, 69(11), 1628-1631.
Lu, B., Chen, X., Castellanos, F.X., Thompson, P.M., Zuo, X.-N., Zang, Y.-F., Yan, C.-G.*. (2024). The power of many brains: Catalyzing neuropsychiatric discovery through open neuroimaging data and large-scale collaboration. Science Bulletin, 69(10), 1536-1555.
Li, H.X., Chen, X., Wang, Z.H., Lu, B., Liao, Y.F., Li, X.Y., Wang, Y.W., Liu, Y.S., Castellanos, F.X., Yan, C.G.* (2024). Characterizing human spontaneous thoughts and its application in major depressive disorder. Journal of Affective Disorders, 365, 276-284
Lu, B., Li, X., Gao, X.-P., Chen, J., Liu, Y., Lu, J.-P., Kat, S.-C., Ma, Z.-H., Zhao, L.-Y., Yin, T.-N., Su, X., Meng, F.-C., Zhang, Y.-R., Wu, S.-X., Yan, W.-J., Du, Y.-S., Luo, X.-R., Liu, J., Yan, C.-G.* (2024). Same same but different: Neuroanatomic and connectomic profiles of early-onset schizophrenia and autism spectrum disorder. Medicine Plus, 1(1), 100007.
Dang, Y., Lu, B., Vanderwal, T., Castellanos, F.X., Yan, C.G.* (2024). Early-treatment cerebral blood flow change as a predictive biomarker of antidepressant treatment response: evidence from the EMBARC clinical trial. Psychological Medicine, 1-10.
Chen, X., Fan, Z., Chen, D., Wang, L.*, Chen, L.*, Yan, C.-G.* (2024). Intracranial neurophysiological correlates of rumination: A cross-sectional observational study. Medicine Plus, 100048.
Hu, X.*, Yan, C.-G.* (2024). Current status and future challenges in brain imaging: Insights from leading experts. Medicine Plus, 100049.
Wang, Y.-W., Wang, H.-L., Yan, C.-G.* (2024). DPABI Harmonization: A Toolbox for Harmonizing Multi-site Brain Imaging for Big-data Era. Imaging Neuroscience, imag_a_00388.
Wu, Y.K., Su, Y.A., Li, L., Zhu, L.L., Li, K., Li, J.T., Mitchell, P.B., Yan, C.G.*, Si, T.M.* (2024). Brain functional changes across mood states in bipolar disorder: from a large-scale network perspective. Psychological Medicine, 54(4), 763-774. (ESI Top 1% Highly Cited)
Sun, Q., Xiong, N.*, Wang, Y., Xia, Z., Chen, J., Yan, C.G.*, Sun, H.* (2024). Shared and distinct aberrations in frontal-striatal system functional patterns among patients with irritable bowel syndrome and major depressive disorder. Journal of Affective Disorders, 362, 391-403.
Shao, K., Chen, X., Yu, X., Yang, J., Wei, M., Zhang, M., Li, R., Wang, X., Wei, Y., Yan, C.G.*, Han, Y.* (2024). Functional connectivity changes in two cortico-hippocampal networks of Alzheimer's disease continuum and their correlations with cognition: A SILCODE study. Journal of Alzheimer's Disease, 13872877241291236.
Wang, Y.W., Chen, X., Yan, C.G.* (2023). Comprehensive evaluation of harmonization on functional brain imaging for multisite data-fusion. Neuroimage, 120089.
Li, H.X., Lu, B., Wang, Y.W., Li, X.Y., Chen, X., Yan, C.G.* (2023). Neural representations of self-Generated thought during think-aloud fMRI. Neuroimage, 119775.
Wang, J., Zhang, W., Xu, H., Ellenbroek, B., Dai, J., Wang, L., Yan, C.G.*, Wang, W.W.* (2023). The Changes of Histone Methylation Induced by Adolescent Social Stress Regulate the Resting-State Activity in mPFC. Research, 6, 0264.
Lu, B., Li, H.-X., Chang, Z.-K., Li, L., Chen, N.-X., Zhu, Z.-C., Zhou, H.-X., Li, X.-Y., Wang, Y.-W., Cui, S.-X., Deng, Z.-Y., Fan, Z., Yang, H., Chen, X., Thompson, P.M., Castellanos, F.X., Yan, C.G.* (2022). A practical Alzheimer’s disease classifier via brain imaging-based deep learning on 85,721 samples. Journal of Big Data, 9(1), 101.
Chen, X., Lu, B., Li, H.-X., Li, X.-Y., Wang, Y.-W., Castellanos, F.X., Cao, L.-P., Chen, N.-X., Chen, W., Cheng, Y.-Q., Cui, S.-X., Deng, Z.-Y., Fang, Y.-R., Gong, Q.-Y., Guo, W.-B., Hu, Z.-J.-Y., Kuang, L., Li, B.-J., Li, L., Li, T., Lian, T., Liao, Y.-F., Liu, Y.-S., Liu, Z.-N., Lu, J.-P., Luo, Q.-H., Meng, H.-Q., Peng, D.-H., Qiu, J., Shen, Y.-D., Si, T.-M., Tang, Y.-Q., Wang, C.-Y., Wang, F., Wang, H.-N., Wang, K., Wang, X., Wang, Y., Wang, Z.-H., Wu, X.-P., Xie, C.-M., Xie, G.-R., Xie, P., Xu, X.-F., Yang, H., Yang, J., Yao, S.-Q., Yu, Y.-Q., Yuan, Y.-G., Zhang, K.-R., Zhang, W., Zhang, Z.-J., Zhu, J.-J., Zuo, X.-N., Zhao, J.-P., Zang, Y.-F., consortium, t.D., Yan, C.G.* (2022). The DIRECT consortium and the REST-meta-MDD project: towards neuroimaging biomarkers of major depressive disorder. Psychoradiology, 2(1), 32-42.
Li, H.X., Lu, B., Chen, X., Li, X.Y., Castellanos, F.X., Yan, C.G.* (2022). Exploring self-generated thoughts in a resting state with natural language processing. Behavior Research Methods, 54(4):1725-1743.
Li, X.Y., Chen, X.,* Yan, C.G.* (2022). Altered cerebral activities and functional connectivity in depression: a systematic review of fMRI studies. Quantitative Biology, 10(4), 366-380.
Ma, Z.H., Lu, B., Li, X., Mei, T., Guo, Y.Q., Yang, L., Wang, H., Tang, X.Z., Ji, Z.Z., Liu, J.R., Xu, L.Z., Yang, Y.L., Cao, Q.J.*, Yan, C.G.*, Liu, J.* (2022). Atypicalities in the developmental trajectory of cortico-striatal functional connectivity in autism spectrum disorder. Autism, 26(5):1108-1122.
Mei, T., Ma, Z.H., Guo, Y.Q., Lu, B., Cao, Q.J., Chen, X., Yang, L., Wang, H., Tang, X.Z., Ji, Z.Z., Liu, J.R., Xu, L.Z., Wang, L.Q., Yang, Y.L., Li, X.*, Yan, C.G.*, Liu, J.* (2022). Frequency-specific age-related changes in the amplitude of spontaneous fluctuations in autism. Translational Pediatrics, 11(3), 349-358.
Yang, H., Chen, X., Chen, Z.B., Li, L., Li, X.Y., Castellanos, F.X., Bai, T.J., Bo, Q.J., Cao, J., Chang, Z.K., Chen, G.M., Chen, N.X., Chen, W., Cheng, C., Cheng, Y.Q., Cui, X.L., Duan, J., Fang, Y., Gong, Q.Y., Guo, W.B., Hou, Z.H., Hu, L., Kuang, L., Li, F., Li, H.X., Li, K.M., Li, T., Liu, Y.S., Liu, Z.N., Long, Y.C., Lu, B., Luo, Q.H., Meng, H.Q., Peng, D., Qiu, H.T., Qiu, J., Shen, Y.D., Shi, Y.S., Si, T.M., Tang, Y.Q., Wang, C.Y., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wang, Y.W., Wu, X.P., Wu, X.R., Xie, C.M., Xie, G.R., Xie, H.Y., Xie, P., Xu, X.F., Yang, J., Yao, J.S., Yao, S.Q., Yin, Y.Y., Yuan, Y.G., Zang, Y.F., Zhang, A.X., Zhang, H., Zhang, K.R., Zhang, L., Zhang, Z.J., Zhao, J.P., Zhou, R., Zhou, Y.T., Zhu, J.J., Zhu, Z.C., Zou, C.J., Zuo, X.N., Yan, C.G.* (2021). Disrupted intrinsic functional brain topology in patients with major depressive disorder. Molecular Psychiatry, 26(12):7363-7371. (ESI Top 1% Highly Cited)
Yan, C.-G.*, Wang, X.-D., Lu, B. (2021). DPABISurf: data processing & analysis for brain imaging on surface. Science Bulletin, 66 (24), 2453-2455.
Chen, X., Yan, C.-G.* (2021). Hypostability in the default mode network and hyperstability in the frontoparietal control network of dynamic functional architecture during rumination. Neuroimage, 241, 118427.
Li, L., Su, Y.A., Wu, Y.K., Castellanos, F.X., Li, K., Li, J.T., Si, T.M.*, Yan, C.G.* (2021). Eight-week antidepressant treatment reduces functional connectivity in first-episode drug-naïve patients with major depressive disorder. Human Brain Mapping, 42(8):2593-2605.
Chen, N.-X., Fu, G., Chen, X., Li, L., Milham, M.P.*, Lui, S.*, Yan, C.-G.* (2021). The contributions of brain structural and functional variance in predicting age, sex and treatment. Neuroimage: Reports, 1(2), 100024.
Chen, X., Chen, N.X., Shen, Y.Q., Li, H.X., Li, L., Lu, B., Zhu, Z.C., Fan, Z., Yan, C.G.* (2020) The subsystem mechanism of default mode network underlying rumination: a reproducible neuroimaging study. Neuroimage, 221, 117185.
Li, L., Lu, B., Yan, C.G.* (2020) Stability of dynamic functional architecture differs between brain networks and states. Neuroimage, 216, 116230.
Zhou, H.-X., Chen, X., Shen, Y.-Q., Li, L., Chen, N.-X., Zhu, Z.-C., Castellanos, F.X., Yan, C.-G.* (2020) Rumination and the default mode network: Meta-analysis of brain imaging studies and implications for depression. Neuroimage, 206, 116287. (ESI Top 1% Highly Cited)
Shen, Y.-Q., Zhou, H.-X., Chen, X., Castellanos, F.X., Yan, C.-G.* (2020). Meditation effect in changing functional integrations across large-scale brain networks: Preliminary evidence from a meta-analysis of seed-based functional connectivity. Journal of Pacific Rim Psychology, 14, e10.
Liang, S., Deng, W., Li, X., Greenshaw, A.J., Wang, Q., Li, M., Ma, X., Bai, T.J., Bo, Q.J., Cao, J., Chen, G.M., Chen, W., Cheng, C., Cheng, Y.Q., Cui, X.L., Duan, J., Fang, Y.R., Gong, Q.Y., Guo, W.B., Hou, Z.H., Hu, L., Kuang, L., Li, F., Li, K.M., Liu, Y.S., Liu, Z.N., Long, Y.C., Luo, Q.H., Meng, H.Q., Peng, D.H., Qiu, H.T., Qiu, J., Shen, Y.D., Shi, Y.S., Si, T.M., Wang, C.Y., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wu, X.P., Wu, X.R., Xie, C.M., Xie, G.R., Xie, H.Y., Xie, P., Xu, X.F., Yang, H., Yang, J., Yu, H., Yao, J.S., Yao, S.Q., Yin, Y.Y., Yuan, Y.G., Zang, Y.F., Zhang, A.X., Zhang, H., Zhang, K.R., Zhang, Z.J., Zhao, J.P., Zhou, R.B., Zhou, Y.T., Zou, C.J., Zuo, X.N., Yan, C.G.*, Li, T.* (2020). Biotypes of major depressive disorder: Neuroimaging evidence from resting-state default mode network patterns. NeuroImage: Clinical, 28, 102514.
Yan, C.-G.*, Chen, X., Li, L., Castellanos, F.X., Bai, T.-J., Bo, Q.-J., Cao, J., Chen, G.-M., Chen, N.-X., Chen, W., Cheng, C., Cheng, Y.-Q., Cui, X.-L., Duan, J., Fang, Y.-R., Gong, Q.-Y., Guo, W.-B., Hou, Z.-H., Hu, L., Kuang, L., Li, F., Li, K.-M., Li, T., Liu, Y.-S., Liu, Z.-N., Long, Y.-C., Luo, Q.-H., Meng, H.-Q., Peng, D.-H., Qiu, H.-T., Qiu, J., Shen, Y.-D., Shi, Y.-S., Wang, C.-Y., Wang, F., Wang, K., Wang, L., Wang, X., Wang, Y., Wu, X.-P., Wu, X.-R., Xie, C.-M., Xie, G.-R., Xie, H.-Y., Xie, P., Xu, X.-F., Yang, H., Yang, J., Yao, J.-S., Yao, S.-Q., Yin, Y.-Y., Yuan, Y.-G., Zhang, A.-X., Zhang, H., Zhang, K.-R., Zhang, L., Zhang, Z.-J., Zhou, R.-B., Zhou, Y.-T., Zhu, J.-J., Zou, C.-J., Si, T.-M., Zuo, X.-N., Zhao, J.-P.*, Zang, Y.-F.* (2019) Reduced default mode network functional connectivity in patients with recurrent major depressive disorder. Proceedings of the National Academy of Sciences of the United States of America, 116(18), 9078-9083. (ESI Top 0.1% Highly Cited)
Fan, Z., Chen, X., Qi, Z.X., Li, L., Lu, B., Jiang, C.L., Zhu, R.Q., Yan, C.G.*, Chen, L.*, (2019) Physiological significance of R-fMRI indices: Can functional metrics differentiate structural lesions (brain tumors)? Neuroimage: Clinical, 22: 101741.
An, J., Li, L., Wang, L., Su, Y.A., Wang, Y., Li, K., Zeng, Y., Kong, Q., Yan, C.G.*, Si, T.M.* (2019) Striatal functional connectivity alterations after two-week antidepressant treatment associated to enduring clinical improvement in major depressive disorder. Frontiers in Psychiatry, 10, 884.
Chen X, Lu B, Yan CG* (2018) Reproducibility of R-fMRI metrics on the impact of different strategies for multiple comparison correction and sample sizes. Human Brain Mapping. 39: 300-318. (ESI Top 1% Highly Cited)
Kong QM, Qiao H, Liu CZ, Zhang P, Li K, Wang L, Li JT, Su YA, Li KQ, Yan CG*, Mitchell, PB, Si TM* (2018) Aberrant intrinsic functional connectivity in thalamo-cortical networks in major depressive disorder. CNS Neuroscience & Therapeutics. 24(11): 1063-1072.
Li Q, Wang L, Li XY, Chen X, Lu B, Cheng L, Yan CG*, Xu Y* (2018) Total salvianolic acid balances brain functional network topology in rat hippocampi overexpressing miR-30e. Frontiers in Neuroscience. 12: 448.
Yan CG*, Yang Z, Colcombe S, Zuo XN, Milham MP (2017) Concordance among indices of intrinsic brain function: insights from inter-individual variation and temporal dynamics. Science Bulletin. 62: 1572-1584.
Yan CG#, Rincon-Cortes M#, Raineki C, Sarro E, Colcombe S, Guilfoyle DN, Yang Z, Gerum S, Biswal BB, Milham MP, Sullivan RM, Castellanos FX (2017) Aberrant development of intrinsic brain activity in a rat model of caregiver maltreatment of offspring. Translational Psychiatry. 7: e100.
Wang L, Kong QM, Li K, Li XN, Zeng YW, Chen C, Qian Y, Feng SJ, Li JT, Su YA, Correll CU, Mitchell PB, Yan CG*, Zhang DR, Si TM* (2017) Altered intrinsic functional brain architecture in female patients with bulimia nervosa. Journal of Psychiatry & Neuroscience. 42: 414-423.
Yan CG*, Wang XD, Zuo XN, Zang YF (2016) DPABI: Data processing & analysis for (resting-state) brain imaging. Neuroinformatics. 14: 339-351. (ESI Top 0.01% Highly Cited)
Yan CG*, Li Q, Gao L (2015) PRN: a preprint service for catalyzing R-fMRI and neuroscience related studies. F1000Research. 3: 313.
Qiu TM#, Yan CG#, Tang WJ, Wu JS, Zhuang DX, Yao CJ, Lu JF, Zhu FP, Mao Y, Zhou LF (2014) Localizing hand motor area using resting-state fMRI: validated with direct cortical stimulation. Acta Neurochir. 156, 2295-2302.
Yan CG, Cheung B, Kelly C, Colcombe S, Craddock RC, Di Martino A, Li Q, Zuo XN, Castellanos FX, Milham MP (2013) A comprehensive assessment of regional variation in the impact of head micromovements on functional connectomics. Neuroimage. 76:183-201.
Yan CG, Craddock RC, Zuo XN, Zang YF, Milham MP (2013) Standardizing the intrinsic brain: towards robust measurement of inter-individual variation in 1000 functional connectomes. Neuroimage. 80: 246-262.
Yan CG*, Craddock RC, He Y, Milham MP* (2013) Addressing head motion dependencies for small-world topologies in functional connectomics. Frontiers in Human Neuroscience. 7: 910.
Dai ZJ#, Yan CG#, Wang ZQ, Wang JH, Xia MR, Li KC, He Y (2012) Discriminative analysis of early Alzheimer’s disease using multi-modal imaging and multi-level characterization with multi-classifier (M3). Neuroimage. 59: 2187-2195.
Yan CG, Gong GL, Wang JH, Wang DY, Liu DQ, Zhu CZ, Chen ZJ, Evans A, Zang YF, He Y (2011) Sex- and brain size-related small-world structural cortical networks in young adults: a DTI tractography study. Cerebral Cortex. 21: 449-458.
Yan CG and He Y. (2011) Driving and driven architectures of directed small-world human brain functional networks. PLoS ONE. 6(8): e23460.
Wang ZQ#, Yan CG#, Zhao C, Qi ZG, Zhou WD, Lu J, He Y, Li KC (2011) Spatial patterns of intrinsic brain activity in mild cognitive impairment and Alzheimer’s disease: A resting-state functional MRI study. Human Brain Mapping. 32: 1720-1740. (From the cover)
Yan CG* and Zang YF* (2010) DPARSF: a MATLAB toolbox for "pipeline" data analysis of resting-state fMRI. Frontiers in Systems Neuroscience. 4(13).
Yan CG, Liu DQ, He Y, Zou QH, Zhu CZ, Zuo XN, Long XY, Zang YF (2009) Spontaneous brain activity in the default mode network is sensitive to different resting-state conditions with limited cognitive load. PLoS ONE. 4(5): e5743.
严超赣*,李雪莹,鲁彬 (2020) 功能磁共振脑影像学. 科学观察. 15, 6.
鲁彬,陈骁,李乐,沈杨千,陈宁轩,梅婷,周会霞,刘靖,严超赣* (2018) 孤独症脑自发活动动态性及其整合的异常机制. 科学通报. 63(15): 1452-1463
严超赣* (2018) 大数据时代的静息态功能磁共振成像——走向精神疾病诊疗应用. 中华精神科杂志. 51(4): 224-227.